rs45980275 SNP Detail

Summary

• ID
  rs45980275
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152915642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ACTGTTCTTT CTGCAGAATT GTTTCCTCTG CATGAACAGC
  TCAGAAATGG TCCACAGTAG CCCCTCAGGC CTCCACAAGA GCTGTCTGCA CGTTTCCCTT
  C
  TCTTGTATGC TGTCTTCTCA TCCAGATATC CAAGGCAGGA TTTCTATCGA CTACTATTCT
  AGTCCCTTCA GCTAAGGGTG GGGAAGGAAA GGGTCAGAGT T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145736574	ENSMUSSNP2534879	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45980275					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152915642 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D1Ertd182e	DNA segment, Chr 1, ERATO Doi 182, expressed			467 bp distal
Nmnat2	nicotinamide nucleotide adenylyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420580	regulatory region 420580			1686 bp distal
Rr420581	regulatory region 420581			66 bp proximal
Rr420582	regulatory region 420582			461 bp proximal
Rr420583	regulatory region 420583			640 bp proximal