rs45980644 SNP Detail

Summary

• ID
  rs45980644
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140425969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTT GTTTGTCCTT TTTGCTCTAA
  S
  TCCTCAAGTC TAGGGTGGGC TGGGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147709657	ENSMUSSNP5279578	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45980644					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140425969 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15194	CpG island 15194	855 bp proximal
Gm69527	predicted gene, 69527	473 bp downstream
Gm69529	predicted gene, 69529	1215 bp upstream
Rcc2	regulator of chromosome condensation 2	1883 bp upstream
Rr377298	regulatory region 377298	353 bp upstream
Rr603516	regulatory region 603516	1955 bp distal
Rr603517	regulatory region 603517	725 bp proximal
Rr603518	regulatory region 603518	1393 bp proximal
Rr603519	regulatory region 603519	1894 bp proximal
Tssr39970	transcription start site region 39970	1208 bp upstream
Tssr39971	transcription start site region 39971	1277 bp upstream
Tssr39972	transcription start site region 39972	1306 bp upstream
Tssr39973	transcription start site region 39973	1328 bp upstream
Tssr39974	transcription start site region 39974	1677 bp upstream
Tssr39975	transcription start site region 39975	1813 bp upstream
Tssr39976	transcription start site region 39976	1829 bp upstream
Tssr39977	transcription start site region 39977	1944 bp upstream
Tssr44270	transcription start site region 44270	985 bp downstream
Tssr44271	transcription start site region 44271	1007 bp downstream
Tssr44272	transcription start site region 44272	1141 bp downstream