rs45980684 SNP Detail

Summary

• ID
  rs45980684
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94524688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTTACC ATATACCAAA
  GCCCACTTCT GACAACACAC ACGTAGCCAC GTGAAATTTT GTTGTTGGGA AAGTTTTGAA
  TCTATCATAA TACTATTTTG TAATTTTGTA AATGATTTAT GTTTTCTGGG AGATAAGGTC
  ATGGCTAGTG ACCCCATCTC AAGGGATGGT TTCTTATCCA GTTTCTCGAT TAAAATCTCA
  K
  CCTAGGCTAT CAGGAGCATC TTGTAAATAA GAAAGGAATA GAAGAAGATA AAACAGATAA
  ATTGCCATGA GAACTACGGC TCAATATTTT GCTCCGGCCA AGAATTCCAC AACTGGTTCC
  AGGAAGCCTC CTTCTTTTGA AGCTTTAGCC TCAGTTTGTG GAACTTGTCA CACAGATTCT
  ACTGGGGTTG GTGTGGCAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60514125	NES16533865	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45980684					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60514125	NES16533865	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94524688 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8506	CpG island 8506	372 bp proximal
Gm41505	predicted gene, 41505	within coordinates
Gm41507	predicted gene, 41507	within coordinates
Rr1836	regulatory region 1836	within coordinates
Rr520192	regulatory region 520192	1757 bp distal
Rr520193	regulatory region 520193	615 bp distal
Rr520194	regulatory region 520194	26 bp proximal
Rr520195	regulatory region 520195	1257 bp proximal
Tssr139566	transcription start site region 139566	1929 bp downstream
Tssr139567	transcription start site region 139567	1861 bp downstream
Tssr139568	transcription start site region 139568	1838 bp downstream
Tssr139569	transcription start site region 139569	657 bp upstream