rs45981992 SNP Detail

Summary

• ID
  rs45981992
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:36531225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGTGTGA TTTGAAACTG
  CTTCAGAATC ATGGTTCAAT AAACATGGAA GGAATATCTC CTGGTTTGTT TCCTGTCTAT
  CTGCTGACAT TGCTTTGGGT TTAATAATTT GTGGCAATAT ATACAGGCAT ATTTTTCCCT
  TGAAGATTTA TAGTTTAGGA ATGTATGGCT TTCCTTTCCC ACATTACTCC TTTCTACTTG
  Y
  AAAAGATATA TATCTTGATT CGGCCTATCT GTCCATCCAT CCCTATGTCA TTAAATACTG
  TTGTAATGTA GCTTTATTGT TTGAGGACAT ATAGCACTCA TACCAGGCAT CTCAACTCAT
  TTATTCTTTA CAATAATATT AATGTATGAT AGATATTATA CATCCAATTT TATGGGTAGG
  GAAATGGGGT AGAGGCTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss61597411	NES17553408	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs45981992					SNP	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61597411	NES17553408	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:36531225 () rs orientation: forward

Symbol	Name	Function Class
Crppa	CDP-L-ribitol pyrophosphorylase A	Intron
Rr387069	regulatory region 387069	158 bp upstream