rs45982389 SNP Detail

Summary

• ID
  rs45982389
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172035295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCT GGTCCTGTGC CTTAGGTTTC
  W
  TATATAGTTC TTCTCTTTGC TCCTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007369	PARCsnp_1.17763	PARC_SEQ	INBRED	f	SNP		A	T
ss120010269	PARCsnp_1.07402	PARC_SEQ	INBRED	f	SNP		A	T
ss146183871	ENSMUSSNP4802358	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320123210	CHEV_1_174137859	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs45982389					SNP	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172035295 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	775 bp distal
Gm17224	predicted gene 17224	within coordinates
Pea15a	proliferation and apoptosis adaptor protein 15A	997 bp upstream
Rr396578	regulatory region 396578	188 bp downstream
Rr423485	regulatory region 423485	935 bp distal
Rr423486	regulatory region 423486	434 bp distal
Tssr294	transcription start site region 294	1095 bp upstream
Tssr295	transcription start site region 295	1045 bp upstream
Tssr296	transcription start site region 296	969 bp upstream
Tssr297	transcription start site region 297	935 bp upstream
Tssr15164	transcription start site region 15164	1063 bp upstream
Tssr15165	transcription start site region 15165	973 bp upstream
Tssr15166	transcription start site region 15166	942 bp upstream
Tssr15167	transcription start site region 15167	22 bp upstream