rs45982569 SNP Detail

Summary

• ID
  rs45982569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:26085338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTATTA GAAAAAGTAT
  CTATTCAAAA ACATATTTCT GTCAGGGATG ATATGACAGT ACTGTCTCTA CTCTCATAAA
  GTAGCCGAAG CTCTGACTGT TAGCTACTCT ACTGACAACC AAGAACATTT TGATGAAACA
  ACTTCATAGT CCCTGTGAGG ATTAACCAAT CAGGTGATAC TGTTTTGTCC ATGTGTCTAT
  R
  GATTCCCTCA AAGGGATGAA ATATAATCTC CCTGAAATTA CTCAAGAGAC TTTGAAAAAT
  AGGAATTAGA ATTGAGCACT TCGACCAATG GTTTTTATAT TCTAATCCTG TAGTTAAGCT
  AGAACATAAA TAAAACACAG CCAAGTAGAG ATAGCACCAA GCAGCCAGTC AGTCAAGAGT
  GGTGCACACC TTTAAACCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60582836	NES16320677	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45982569					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60582836	NES16320677	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26085338 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20188	CpG island 20188			1609 bp proximal
D830025C05Rik	RIKEN cDNA D830025C05 gene			1690 bp upstream
Gm45570	predicted gene 45570			216 bp upstream
Letm2	leucine zipper-EF-hand containing transmembrane protein 2			Intron
				Noncoding-Transcript-Variant
Rr400804	regulatory region 400804			1626 bp upstream
Rr661157	regulatory region 661157			1280 bp proximal
Rr661158	regulatory region 661158			1701 bp proximal
Tssr76686	transcription start site region 76686			1774 bp upstream
Tssr80717	transcription start site region 80717			1678 bp downstream