rs45982680 SNP Detail

Summary

• ID
  rs45982680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:34547172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCCATCTT CTTAACCCAA
  GACAAATTTC TCATTAAAAA GAAAATGTAC ATGATAATAG AAAGGGCTGC TGAAGAATCG
  CCTTTGGAGC CAGTGCTGTA TGTCTTTCTG CATATCCTGT GAAGAGTTAT TTCCTTCATT
  GTTTTATATC AACCCCTTCT CCTCTTTACG TCTTACAAAC AAACAAAGGG AACTTTCCAA
  Y
  GCCCCTACAG TCCCCAAGCT AATTACTAGC AAGCTGACAC TCATGTTCAA TTAGCCAATC
  CACTACCCGA AACCGCTCGC TTGAGCCATG GAAAGCCTTC TAGATCACTT CAGCAGCCTT
  GTACACTGAG TCTGGGCCAA TTCCTCCTTG CTTCACAGCA CCCTTCCTGC CCCTGGCATG
  TGGAATGTGG TCAGATTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61376804	NES16749999	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45982680					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61376804	NES16749999	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:34547172 () rs orientation: forward

Symbol	Name	Function Class
Kirrel3	kirre like nephrin family adhesion molecule 3	within coordinates
Tssr84320	transcription start site region 84320	427 bp upstream