rs45983077 SNP Detail

Summary

• ID
  rs45983077
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:36918191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGGTCACA CACACACACT
  TCCCTGCAAA AGAAATCACT TTCTTTAGGA AAACCAAACC AGAACTCCTT CCAGAGTCCC
  CAAGAGCTAA TGCCCCGACT CAGGGAGTCT GCAGGGTTTT CTGCAACCAG CGGCAGACCC
  TGGCCAGCAA GTCCCCTTAG GCGCCTCTGG GGTAGGCAAT CTCCGGTCGC CTACCAAGCC
  R
  TACCGGGCGG CCACTTACCT ATTTGCACCG CGAGGATCAG TGAAATATAT CTGCCGTTCA
  ACTTAAGTCC CATCCTACGT TTAGTCAAAC CATTTGCGAC CGCAGACCTT TAAATAGTTA
  GTTTAGAGAA CGCGGGGGAA AGCTGAAAAA TAGGCATTGC CAACAAGTTC CGGGAGCGAC
  AGAGACTTTA TGCACTGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61769737	NES17697931	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	G	G	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45983077					SNP	G	A	A	A	A	A	G	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61769737	NES17697931	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36918191 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5450	CpG island 5450	1874 bp distal
Cpgi5451	CpG island 5451	594 bp proximal
Cpgi5452	CpG island 5452	1698 bp proximal
Gm56572	predicted gene, 56572	671 bp upstream
Nrn1	neuritin 1	Intron
Rr477393	regulatory region 477393	1981 bp distal
Rr477394	regulatory region 477394	within coordinates
Rr477395	regulatory region 477395	250 bp proximal
Rr477396	regulatory region 477396	682 bp proximal
Tssr119271	transcription start site region 119271	639 bp upstream
Tssr122097	transcription start site region 122097	49 bp downstream
Tssr122098	transcription start site region 122098	76 bp downstream
Tssr122099	transcription start site region 122099	154 bp downstream
Tssr122100	transcription start site region 122100	187 bp downstream
Tssr122101	transcription start site region 122101	209 bp downstream
Tssr122102	transcription start site region 122102	233 bp downstream