rs45983804 SNP Detail

Summary

• ID
  rs45983804
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82961248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATCAGGTT GAAGGGGGAT TAATAATCTG TATGAGGGCG
  GCAGAGATGG CTCAGTGGCT AAGAGCACTG ACTGCTCTTC CAGAGATCTG AGCTGTAACC
  T
  CCCCCCCCCA GCCTGAAACC TGGTTGCTCA GGTTTCACTG TTAGCAAGAA GAGAGCATGG
  GAGAGGGGGG AGGAGCCTGC CGCCCTATCG TTCATCCTA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss132466450	ENSMUSSNP3762698	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs45983804					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82961248 () rs orientation: forward

Symbol	Name	Function Class
Rr452897	regulatory region 452897	1908 bp distal
Rr452898	regulatory region 452898	1320 bp distal
Slfn2	schlafen 2	within coordinates
Tssr103643	transcription start site region 103643	1126 bp downstream
Tssr103644	transcription start site region 103644	1073 bp downstream
Tssr103645	transcription start site region 103645	902 bp downstream
Tssr103646	transcription start site region 103646	828 bp downstream
Tssr103647	transcription start site region 103647	672 bp downstream
Tssr103648	transcription start site region 103648	592 bp downstream
Tssr103649	transcription start site region 103649	544 bp downstream