rs45985199 SNP Detail

Summary

• ID
  rs45985199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54869675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGG CCGGGGACAC CGCCAGCCTC
  R
  CTGCCCGAGC CCAGGGAGCT GAGCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139566989	ENSMUSSNP962601	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss324638709	CHEV_14_55251055	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45985199					SNP	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54869675 () rs orientation: forward

Symbol	Name	Function Class
Cdh24	cadherin-like 24	within coordinates
Cpgi6468	CpG island 6468	within coordinates
Rr289238	regulatory region 289238	1926 bp proximal
Rr299444	regulatory region 299444	within coordinates
Tssr128611	transcription start site region 128611	66 bp downstream
Tssr128612	transcription start site region 128612	85 bp downstream