rs45985283 SNP Detail

Summary

• ID
  rs45985283
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:48494312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAAACAC GGAAGGACTC
  CTCTAAAGCT GGAAGTCTCT TTTCATTGTT GATTCTCATC TCCTTTGGGA ATGGACATCT
  ATGTAACTAA AATACAGCAA AGCATCCTTC AAGCCCTGAG ACCAATTTTA AGGACCTGAA
  CTGTGAATGA TAGAAGCCTC TCTTTGCAGA AACGCTGCTC AGCAGAGTTC CCTCTTAAGT
  K
  CCATCTCTTC TCTTAATTCA GCAAGGCAGA CAATGAAGTG TGAGAAGGCG CAGGCTTTTA
  AAAGAACTAA AGCTCCATTC AGGACATTAG CAGTCTGATC TGGGGCACAC GGCTCTGACT
  CCTGAGCACA GCCCCCATGG ATGTCAAAAT GAGCAGGTTT GTCCCAGGAT GCTGAAGGCA
  ATAACAGTGA CTACATATAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss149207734	ENSMUSSNP5368321	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs45985283					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48494312 () rs orientation: forward

Symbol	Name	Function Class
Csrp3	cysteine and glycine-rich protein 3	Intron
Rr646924	regulatory region 646924	1827 bp distal
Rr646925	regulatory region 646925	404 bp proximal
Tssr72622	transcription start site region 72622	902 bp upstream
Tssr72623	transcription start site region 72623	890 bp upstream
Tssr72624	transcription start site region 72624	647 bp downstream
Tssr72625	transcription start site region 72625	674 bp downstream