rs45985514 SNP Detail

Summary

• ID
  rs45985514
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127291179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCATAAG GATTTCAAAC
  TCTAGCAATT CCTTTGGAAA CAGACTGACA TAAAAAGAAA TTCTCGTTAA ATTTTAGGTA
  TTACATTTAA AACCTCCATT AAAAGAGTAT ACCGTAATGC AACTCTACCT AGAGATATCA
  GGGGCCAAAT GAGACAAAGA CCTTGTTAAG TGTTAACCAA ATTTTCCTAT CATCCATTCA
  Y
  AAATTAGGGG GTTCTGAGTG TTCTTCAAAA AGTTCACAGT ACTAGGAAAG ACAGCATTCC
  CTTCTGTTGG GAATTACCTT TCTGTCTAAT AGTAACTATA TAGTTACTCT GTTTCTAAAT
  AGGAATCCAG TTCTCTTTGG TAGTTCCTTC CTTGCCATTA GCAAATCACA TCTCAGAATA
  AAATGCCATC TGAACAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss61079248	NES16587044	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	C	C	T	T	T		T	T		T
ss135865083	ENSMUSSNP7185361	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss320954682	CHEV_3_127200448	CHEVERUD	SCREENING_POP	f	SNP												T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs45985514					SNP	C	C	C	T	C	T	C	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079248	NES16587044	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127291179 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13791	CpG island 13791	802 bp proximal
Rr584800	regulatory region 584800	1461 bp proximal
Tssr35576	transcription start site region 35576	1456 bp downstream
Tssr35577	transcription start site region 35577	1519 bp downstream
Tssr35578	transcription start site region 35578	1546 bp downstream
Tssr35579	transcription start site region 35579	1565 bp downstream