rs45985930 SNP Detail

Summary

• ID
  rs45985930
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18996781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTCAAGGC CAGCCTGGCC TAAGGTGAGT TTCAGGACAG
  CCAAGGCTAC CCAGTGAAAC CCTGTCTCCA AATAGCACAT AGGGCTGGCG AGATGGCTCA
  G
  CGGGTAAGGG CACTCACTGA CTGCTCTTCT GAAGGTCCTG AGTTCAAATC CCAGCAACCA
  CATGGTGGCT CACAACCACC CATAATGAGA CCTGACTCC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148471693	ENSMUSSNP2248037	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45985930					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18996781 () rs orientation: forward

Symbol	Name	Function Class
Tssr70880	transcription start site region 70880	1913 bp upstream
Tssr70881	transcription start site region 70881	1849 bp upstream
Tssr70882	transcription start site region 70882	797 bp upstream
Tssr70883	transcription start site region 70883	1613 bp downstream
Tssr70884	transcription start site region 70884	1954 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates