rs45986100 SNP Detail

Summary

• ID
  rs45986100
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:7258684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCCCAGTT TCTCTGCCTC CTGCAGGCTT CAGGAGAGCA
  CCTGTGTGAG TGCTGTTAAT TGTTAGGATT AGGAGAGGGA GGCTGACAGG GAATGGGCTC
  A
  GGTGGTGGTG GTGGTGGTGA CAAGCCACCC TGCCTCCTCT TTGTCCTTAT GCTGAACCAG
  GCCTGGATTG TGCCACTCTC TGGAATTCCC TGGCTTATG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145100494	ENSMUSSNP2293078	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45986100					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:7258684 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm49721	predicted gene, 49721			Intron
Rnaset2b	ribonuclease T2B			Intron
				Noncoding-Transcript-Variant
Rr392231	regulatory region 392231			987 bp downstream
Tssr146343	transcription start site region 146343			1966 bp downstream