rs45986403 SNP Detail

Summary

• ID
  rs45986403
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119067776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGC TGGGCAGGAC CGGTGGGAGT
  R
  CAACCGGCGT GGGCGGGGCC GGCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147326851	ENSMUSSNP3381623	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320474343	CHEV_2_119063031	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs45986403					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119067776 () rs orientation: forward

Symbol	Name	Function Class
9130007G19Rik	RIKEN cDNA 9130007G19 gene	20 bp upstream
Cpgi12109	CpG island 12109	within coordinates
Rr563445	regulatory region 563445	31 bp distal
Rr563446	regulatory region 563446	219 bp distal
Rr563447	regulatory region 563447	within coordinates
Rr563448	regulatory region 563448	84 bp proximal
Rr563449	regulatory region 563449	326 bp proximal
Rr563450	regulatory region 563450	782 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	65 bp upstream
Tssr19609	transcription start site region 19609	78 bp downstream
Tssr19610	transcription start site region 19610	56 bp upstream
Tssr19611	transcription start site region 19611	95 bp upstream
Tssr19612	transcription start site region 19612	158 bp upstream
Tssr19613	transcription start site region 19613	187 bp upstream
Tssr19614	transcription start site region 19614	216 bp upstream
Tssr19615	transcription start site region 19615	236 bp upstream
Tssr19616	transcription start site region 19616	339 bp upstream
Tssr19617	transcription start site region 19617	351 bp upstream
Tssr19618	transcription start site region 19618	383 bp upstream
Tssr19619	transcription start site region 19619	430 bp upstream