rs45987049 SNP Detail

Summary

• ID
  rs45987049
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:13489749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTATTTA TTTATTTATT
  TATTTGTATC CCAAGAGCTT TCCCACCTCC AAGATCTCAT TATGTAGTGC AGGATAGCTA
  GTCTTGGATG CACAGTCTAA TCCAGGCTGG TCTCAAATTT AGTATCTTCA TGCCTTTGTC
  TACTCAGTGT TGGAATTTTA TGCGTGATTA TAAGCATGTG CTACTACGCC TAGCTGAAAA
  S
  TATTTTATTA TGATGAACAT ATCTCAATAG TGCCCTCCAG GAGGTATAGC TCAGGAAAAT
  GTATAAGCCC CAGGGTATAA CTTGTAAAGC ACAGTGATAA TTCCAGAAGC TAATGCCAGG
  CACATATGAA GTGTATTTGT GTTTTAATAA GATCTATGTT GGTTTTAGTC ACTTCCTGGT
  ACAATAAATT TGGAAGATTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52533621	NES15597310	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45987049					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52533621	NES15597310	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:13489749 () rs orientation: forward

Symbol	Name	Function Class
D15Mit179	DNA segment, Chr 15, Massachusetts Institute of Technology 179	260 bp proximal