rs45988420 SNP Detail

Summary

• ID
  rs45988420
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72322937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACGCCTTT AATCCCAGCA
  CTCGGGAGGC AGAGGCAGGC GGATTTCTGA GTTCGAGGCC AGCTGGTCTA CAAAGTGAAT
  TCCAGGACAG CCTGGGCTAA TAAAAAGAAA CCCTGTCTAG AAAAAAACAA AAAAAACAAA
  ACAAAATAAC AAAAAAAAGT AAACCCAAAG AAGATGCACA TTCTCACATA TTTAAATATT
  W
  AATGTAACTA TTTTCTTCTT GATGGCTTCC TTGTGCGTGT GTTTACGTGA TCATTCTAAG
  TTTAATAACT TTTCCTTTTT CTTGCTTTTA GCACAGGGGA CGTGAGAAGA AAATCTGATC
  AGGGCCTCTC AACATTTCTC GGCTATTCGG AATAAAACCT CTGTTATTTC GTTTTCCCTC
  ATTGCTCAGC TCTGCAGACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss144651953	ENSMUSSNP2718503	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs45988420					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72322937 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	258 bp proximal
Pecr	peroxisomal trans-2-enoyl-CoA reductase	within coordinates
Rr412794	regulatory region 412794	792 bp distal
Rr412795	regulatory region 412795	471 bp proximal
Rr412796	regulatory region 412796	602 bp proximal
Tmem169	transmembrane protein 169	617 bp upstream
Tssr114	transcription start site region 114	494 bp downstream
Tssr115	transcription start site region 115	510 bp downstream
Tssr116	transcription start site region 116	527 bp downstream
Tssr7298	transcription start site region 7298	589 bp upstream
Tssr12164	transcription start site region 12164	446 bp downstream
Tssr12165	transcription start site region 12165	470 bp downstream