rs45989501 SNP Detail

Summary

• ID
  rs45989501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128359315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTCCCT CCCTCTCCCC
  CACCACATTT TGTTGTTGTT GTTGTTGTTC TGACGACTTA TTTTATGTAC ATCGGTGTTT
  TGCTTGCATG TATGTCTGTG TGAAAGTATC AGATCCCTTG GATCTCGCAG TGTGAGCTGC
  CATGAGGGTG CTGAACCCAG GACCTCCGGA AGAGTAGAGT CAGTGAGTGC CCTTAACCAG
  Y
  GATCCATCTT TCTACCTCTC CCCCACATGC ACGCTTTTTT TGTTTTAATG ACTTATATGC
  ATTGGTGTCT TGCCTACATG TATGTCTGTA TGAAGGTGTC AGATCCCTTG ATTCTAGAGT
  TACAGGCAAT GTGAGTTGCC ATGTGGGTGC TAGGAATTGA ACCCAGGTCC TCTGGAAGAG
  TAGTCATTGC TTTTAACCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147740696	ENSMUSSNP5652875	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C		T
ss323534400	CHEV_10_127960502	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs45989501					SNP	C	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128359315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2406	CpG island 2406	1260 bp proximal
Esyt1	extended synaptotagmin-like protein 1	within coordinates
Gm29585	predicted gene 29585	within coordinates
Rr224467	regulatory region 224467	485 bp proximal
Rr369107	regulatory region 369107	1506 bp upstream
Rr369108	regulatory region 369108	1860 bp upstream
Tssr99886	transcription start site region 99886	966 bp upstream