rs45989556 SNP Detail

Summary

• ID
  rs45989556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41443959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAG GATACATGCA GATGTAGCTC
  R
  TGTATGCATA GAGAGAGGAG CACGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss136357154	ENSMUSSNP4703011	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A		G
ss322926785	CHEV_9_41340746	CHEVERUD	SCREENING_POP	f	SNP				A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs45989556					SNP	A	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41443959 () rs orientation: forward

Symbol	Name	Function Class
Gm48742	predicted gene, 48742	576 bp upstream
Mir100	microRNA 100	1159 bp downstream
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677056	regulatory region 677056	20 bp distal
Rr677057	regulatory region 677057	193 bp proximal
Tssr84510	transcription start site region 84510	1164 bp downstream
Tssr84511	transcription start site region 84511	642 bp downstream