rs45989888 SNP Detail

Summary

• ID
  rs45989888
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:105169756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAAATATA TGCATTTTAG AGTTGGGATA CATTCATACT
  ACCATTGTAT ATATAATTAA AAACATACAT GCTAATAAGT TCAACATATA CTACTCTATA
  M
  AGAAGTGTGA TTTAAAAATA AAAAACTCAC CATTCCCAGT GACCTTAATT CCCTCTTTGA
  GGGTCTTAAT CTTGGCATAA TTGAAGATGT AAGAAACAAA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61208987	NES16715608	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	C	C	C	A	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs45989888					SNP	A	A	C	C	C	C	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61208987	NES16715608	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105169756 () rs orientation: forward

Symbol	Name	Function Class
Gbp8	guanylate-binding protein 8	within coordinates
Rr119754	regulatory region 119754	505 bp proximal
Tssr52232	transcription start site region 52232	6 bp downstream