rs45990259 SNP Detail

Summary

• ID
  rs45990259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122035544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGTTTCCT CCCAAGGGCA GTTGAAGACC TGGTTATCAG
  GTGTGACTTG GGAGAAGCTC CTGGCTCATC TAGCTTTTCT TTTTCCCTTT AGTCTATGTA
  Y
  GTGAGGAGAA GCCAAAGGCC TTGCTTGGCC GTTGCAATTT TTCCTCTGTG TTGACCAATG
  TCCTGGCAGA CTGGATGCTG GGTAGAGCCC ACTCAGTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135737700	ENSMUSSNP6073193	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320909859	CHEV_3_121944813	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45990259					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122035544 () rs orientation: forward

Symbol	Name	Function Class
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	1209 bp upstream
Rr375675	regulatory region 375675	865 bp upstream
Rr584261	regulatory region 584261	847 bp proximal
Rr584262	regulatory region 584262	1220 bp proximal
Rr584263	regulatory region 584263	1303 bp proximal
Rr584264	regulatory region 584264	1958 bp proximal
Tssr31477	transcription start site region 31477	1208 bp upstream