rs45991212 SNP Detail

Summary

• ID
  rs45991212
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72685872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATCGAGT CTCAGCTACC
  TGGTGAGTTT GACACCCGCC CCCCGCACCC CCTCCTCCCC CCCCCCCGCG GGCTTACAGG
  AGACTCTGTT TCAAACCCAA AGACCCAAAT GAGGAGTAAA GGTGCTTAGG TGGGTCCTGG
  TATGCAGCCA GATTCCAAAC ATTGCTTTCA TTCTCCAGTC CTCTACTAGA GCAGGTACCA
  K
  AAGACCTCCT TGTGTGGAGG CTCAGTGGGT AAAGTACTTC CCACTGCAAG TGTGAGGACC
  TGAGTTCAAA TCCCCAGAAA CCGAATAAAG CCAAATCCAG CAGAAAGGAG CTATAAGCCC
  AGTATAGAGG CAGAGACAGG AGAATCCACT GCCCAGCAAA CGGGTCTTTT TAAAAAGACC
  TCTTAGGCCG GGCGTGGTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61421328	NES16805529	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45991212					SNP	G	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61421328	NES16805529	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72685872 () rs orientation: forward

Symbol	Name	Function Class
Gm27204	predicted gene 27204	within coordinates
Gm68390	predicted gene, 68390	1989 bp downstream
Gm68819	predicted gene, 68819	1825 bp upstream
Rr197250	regulatory region 197250	672 bp distal
Rr197251	regulatory region 197251	272 bp distal
Rr197252	regulatory region 197252	929 bp proximal