rs45991236 SNP Detail

Summary

• ID
  rs45991236
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46655735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGCCGGAG CCGGCTTTGC ATCACCGAAG CCAGGACCTG
  AGCTCTACAG CAGGTCAGGC TGGAACGCGG AGGGGGACGG GGGGGGGGGG GGCGGCGAGG
  R
  GAATGGGGGG CTTGCCTGGA CACCCGGCAC CCAAGGCCGG CGCTCTCAAG TTGCGCGCCC
  CTGGTAGGGT GGGAGATGGC CAGGGCGCGG GGAAGAAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148973619	ENSMUSSNP2490420	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss324333695	CHEV_13_46597628	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs45991236					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46655735 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	within coordinates
Cpgi5539	CpG island 5539	within coordinates
Gm35110	predicted gene, 35110	334 bp upstream
Gm61509	predicted gene, 61509	636 bp upstream
Rr478915	regulatory region 478915	401 bp distal
Rr478916	regulatory region 478916	300 bp distal
Rr478917	regulatory region 478917	83 bp distal
Rr478918	regulatory region 478918	146 bp proximal
Rr478919	regulatory region 478919	657 bp proximal
Tssr119597	transcription start site region 119597	374 bp downstream
Tssr119598	transcription start site region 119598	343 bp downstream
Tssr119599	transcription start site region 119599	211 bp downstream
Tssr119600	transcription start site region 119600	152 bp downstream
Tssr119601	transcription start site region 119601	119 bp downstream
Tssr119602	transcription start site region 119602	72 bp downstream
Tssr119603	transcription start site region 119603	630 bp upstream
Tssr122343	transcription start site region 122343	528 bp downstream