rs45991285 SNP Detail

Summary

• ID
  rs45991285
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:32489911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGTTAG ACTCCTTGAG
  TCCCAGCACA ACCTAAGACC CCAGCCATAT CTTTCTAGCT CTCTTATGCC TAGGCTCTCA
  ATGAGATCTT CTGAGCATTG TATAGGTTCT ACTGCCTTCA TTATTAGGTC CTTTTTCCAT
  TTGGATTAGA GATGAACAGG ACACAGGAAA AGAAAGGCTC AGAAAGCAAA GTTGGAGGAT
  K
  CTTCCATCCC CAAACACCTA AAGATGCCTC ACCAGCTCCC ACAGTGTCTA TATCCAACAC
  AGCCCAGGCA CTGACACTTG CAAATGTTTC TATACTCATA GCCACTCAGT CATAGGAGAC
  CACTCCTGGC CGTTCCCAGC CTCTCTTCTG ACATGAATAC AGCCAGTCTT CCTCGCCCAT
  GGAGAAGCAG AAGCACCATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss133100274	ENSMUSSNP1606767	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs45991285					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32489911 () rs orientation: forward

Symbol	Name	Function Class
Plxna4	plexin A4	within coordinates
Plxna4os1	plexin A4, opposite strand 1	within coordinates
Rr628119	regulatory region 628119	1893 bp distal
Rr628120	regulatory region 628120	1577 bp distal
Rr628121	regulatory region 628121	590 bp distal
Tssr55474	transcription start site region 55474	1806 bp downstream
Tssr55475	transcription start site region 55475	1786 bp downstream