rs45993122 SNP Detail

Summary

• ID
  rs45993122
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55565124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTACCTA GCAAGTCACA
  GGCCAGACAA AAGCTATGCA GTAAGATGCT GTGCAAAGAT GGGTGTAAGG ACGGGGAGTG
  TAGCGCAGTC AGTACAGTGC AGTTGACAGA GGGCCTGGCT AGACCAAGAA CAAAGTTTTG
  GGATTGATCC CCCTGCACCA CATAAACTGG GTGATTGTAT AGGCCTATAA TTTCGGCATT
  R
  GGACGACAGA TATCTCAATA AATCAATAAA CAGAAGGACA TTTTTAAAAG CAAGAAATGT
  ACTCATCTGG ACAACTAGGC TCCTCTCCTG CAAGGGAACT ACAAACCTCG CTTTGGAGTC
  ACCGCATCCC CGAAGGCTCT GGCTGGCTGG CTCCTAACCC AGCTTGTACT TAGAGGCATC
  AGATGCAGCC TCAGATTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61806174	NES17743066	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45993122					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61806174	NES17743066	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55565124 () rs orientation: forward

Symbol	Name	Function Class
BC038268	cDNA sequence BC038268	1719 bp downstream
Cpgi5668	CpG island 5668	1970 bp distal
Cpgi5669	CpG island 5669	919 bp proximal
F12	coagulation factor XII (Hageman factor)	647 bp downstream
Rr480459	regulatory region 480459	1748 bp distal
Rr480460	regulatory region 480460	1151 bp proximal