rs45993306 SNP Detail

Summary

• ID
  rs45993306
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34877331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGAACCT CAAAGAATTC
  AGCAAAGGGA TCAACGCCTG CACTGTCAGA GAAGACTATA TGATGAAAAA AAGTAAGATG
  AAGAAACCTG TTTGAAAAGG CCCAGAGAAA AATGTGCTAC TGTCAAAAGC AGCCTGAGTG
  ATGCGCAGTG GGTGGTGCAC TGCAGGTGGT ACTCTGCAGG TGATACATTG CAGGTGGTGC
  W
  CTGCAGGTGG CACTCTGCAG GTGATACATT GCAGGTGGTG CTCTGCAGGT GATACTCCAC
  AGACAGCTTT CTACTCCCTG TGCTTTGCCA ACTCTACCAT GAGCAAAAAC CCAATGCCAA
  CAGACCAAGA ACTAGGCCAA ACTCAATACA AATACCTAAC ATTTCACCTC TTAAACAGAA
  AATTAAATTA AATTTTTAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147562960	ENSMUSSNP3739212	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs45993306					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34877331 () rs orientation: forward

Symbol	Name	Function Class
Stk3	serine/threonine kinase 3	within coordinates
Tssr133982	transcription start site region 133982	957 bp upstream
Tssr133983	transcription start site region 133983	844 bp upstream
Tssr133984	transcription start site region 133984	1637 bp downstream