rs45994762 SNP Detail

Summary

• ID
  rs45994762
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171285031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGCTGGCCT AGAACTCACT GTAGATCAGG CTGACCTGGA
  ATTCACTGCA TAGACTAGGC TGACCTGGAA CTTGCATCAG ATTTCTTGCC TTTGCTTTTT
  W
  TTTTTTTTTT TTTTTAAGAT TTATTTATTT CATGTATATG AGTACACTGT CACTGTCCTC
  AGACATACCA GAAGGCAGCA TCAGATCCCA TTACAGATG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss119999041	PARCsnp_1.13598	PARC_SEQ	INBRED	f	SNP			T	A
ss146163756	ENSMUSSNP6460409	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs45994762					SNP	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171285031 () rs orientation: forward

Symbol	Name	Function Class
F11r	F11 receptor	within coordinates
Rr25638	regulatory region 25638	164 bp proximal
Tssr10057	transcription start site region 10057	642 bp upstream
Tssr10058	transcription start site region 10058	870 bp upstream