rs45995858 SNP Detail

Summary

• ID
  rs45995858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57718920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTCGGCTGCG TCCACACGCA GGAAACCGAT TGCTGGCACG
  CGACCGTTAT TCACCACCGC AGAGATGCCT GTCTTAGCGA ACCCCGGTTT AGCTCCATAC
  Y
  CACCCGTACC CCCAAGCAAA TGCGCCAGCG GTGAACACGC AGTTGGGGCC ACGGAGGCCG
  GCTCTGGCCG CATGCATGGG CATCCTACAC CACACATGGT C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132181216	ENSMUSSNP279886	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs45995858					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57718920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2910	CpG island 2910	within coordinates
Cpgi2911	CpG island 2911	979 bp proximal
Hand1	heart and neural crest derivatives expressed 1	619 bp downstream
Rr447811	regulatory region 447811	337 bp distal
Rr447812	regulatory region 447812	within coordinates
Rr447813	regulatory region 447813	852 bp proximal
Rr447814	regulatory region 447814	1391 bp proximal
Tssr3506	transcription start site region 3506	1176 bp downstream
Tssr108123	transcription start site region 108123	862 bp downstream
Tssr108124	transcription start site region 108124	923 bp downstream
Tssr108125	transcription start site region 108125	955 bp downstream
Tssr108126	transcription start site region 108126	1141 bp downstream
Tssr108127	transcription start site region 108127	1214 bp downstream
Tssr108128	transcription start site region 108128	1221 bp downstream
Tssr108129	transcription start site region 108129	1352 bp downstream