rs46000457 SNP Detail

Summary

• ID
  rs46000457
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19297697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTAGGAA AGACAGGCTT
  TATCTCTGGC TCCTCCTGCC TCTACACCCC CTTCCCCACA CCAAATGCTG GGATTACAGA
  CTTGGGTCAC TGTGCTTAGC TAGGAACTGC TTCCAGATAT CATGTACTGA AAGATTTCTA
  GTGACAAGGG GCTGAAACAG GGGACACAGA CTCCCTCACT AGACGGCTAG AGCAAACTGA
  A
  GAAGGGTAAA ACTTCAACGC TAACCACCAA CCTGCAGCAT TTGCTCCCGG GCACTGGCAC
  GGCACTGGCA CACAAGTGTG ACCACCACCA CCACTCCCAG TCCCCTCCGT GGGAAGACAA
  ACCTGCAGGT GACTGCAGTG GACCACATCA CCAAGAGGGA ACCTTGAAAC CTAGTGTAAG
  CCAAGGCCCT GTCTAGGCCT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss148478867	ENSMUSSNP162007	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs46000457					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19297697 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18499	CpG island 18499	963 bp distal
Gemin7	gem nuclear organelle associated protein 7	1177 bp downstream
Ppp1r37	protein phosphatase 1, regulatory subunit 37	696 bp upstream
Rr643188	regulatory region 643188	1265 bp distal
Rr643189	regulatory region 643189	206 bp distal
Rr643190	regulatory region 643190	795 bp proximal
Rr643191	regulatory region 643191	879 bp proximal
Tssr70928	transcription start site region 70928	1606 bp upstream
Tssr70929	transcription start site region 70929	1575 bp upstream
Tssr70930	transcription start site region 70930	1524 bp upstream
Tssr70931	transcription start site region 70931	1371 bp upstream
Tssr70932	transcription start site region 70932	1335 bp upstream