rs46001472 SNP Detail

Summary

• ID
  rs46001472
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16455187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAAAAAG AAAGTCAAAT
  CCTGGAAGCG GGCTTCTTTG GGGCAGCCAT CTTTCATTCC CTCCCTACCT TACACCTCCC
  CTGTCACCTG CACCAGGACA AATGAACGAA CAGCTGACCA ATTATCACCT AAGAAGAAGC
  AGGGGCTGCC AGCTTGAGCC TCCACCAAGA TTCCCCAGTG TGACCCTGGA GACCTGCACA
  R
  CTAGAAGTCA CATGAACCAG AGCCCTAGGG ACTGGGTAGA GCTTGAGATC TGGATGTCAA
  TCAGAGAGAT GCATGAGCTG TAAAAATTAA AAATAAATAA AACCTCAATG ATTTTGCAGA
  GAATGCTGGG GAGCTGGGAC AGTTGCCCTC TCCCGTGTCA CAGGCAGTGG GAGGAATGGG
  TAAGCAGTTT TGGAGGAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60972101	NES16154406	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	G	A	A	A	G	G	G	A
ss148394868	ENSMUSSNP733463	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46001472					SNP	G	G	A	A	A	G	G	A	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60972101	NES16154406	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16455187 () rs orientation: forward

Symbol	Name	Function Class
Ceacam9	CEA cell adhesion molecule 9	667 bp upstream
Gm5586	predicted gene 5586	1352 bp upstream
Tssr64618	transcription start site region 64618	692 bp upstream
Tssr70767	transcription start site region 70767	1322 bp upstream