rs46002828 SNP Detail

Summary

• ID
  rs46002828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:82746557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTATGTG GAAATACACT
  TACAAGGTGA AAACTTACAG TCTTCTCTGA ATAAATATTC AGCCTTGGCA CACACATGGC
  ATTCTATACT TTAAAACACA TAGGAGGTTT TCAAAGTATT CACTGGGGTA TGTATCTACT
  TTTGTGCTGG CTGAATAGGT CTGCTTTTGA ATGAATCTTG GTTGGAGCAG CAATTCAGCC
  Y
  TGAGGACATC CCAAGAAGGA AAAAACAAAG GCAAGGCCCC GAGTCATTAG GTCAAAACAC
  AATCCTTTGA GAACTGAATC CATAAGGCTT TCTCTAGCAC CAGAAATGCA GGAGGCATGT
  TCATGGCAGA GAGCTAGGGA CGGTAGATGG ATGGATGAAA ATACTCTCTG ACACTCTGGG
  AATTCAGCAG GCTCTTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61434569	NES16814249	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46002828					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61434569	NES16814249	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:82746557 () rs orientation: forward

Symbol	Name	Function Class
Gm38553	predicted gene, 38553	within coordinates
Phip	pleckstrin homology domain interacting protein	1655 bp downstream