rs46002864 SNP Detail

Summary

• ID
  rs46002864
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84510429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGGAGAA ATGTCACTTT
  ATCTGAGAGA GTAAAATCCA ACTCTAACAG GAAACAGCAA ATTCATCTTT TTTCTTTTTC
  TAAACCACTC TGCTGGAGAC AAGTCCCTTG AGTCAGAGCT CTTTAAGGCG CACTTCCTTT
  ACATGGGTCA AACTGAAGCC ACCGGTTTGT GAGTCCCCAA AGGAATCACT GGAGGACAAC
  R
  GGAGCATTTT CAGATACCTT TCAGGGCAGA CCTGCCCTGG CTGTACCCCC TATCTTGAAG
  AAAAAGAAAA ACGAATAAGG TGAAAATCGC AACTACTATT TATAGAATCA AAATGGGTTC
  ATCCATTGAG TTTTAACTTT CAAAAATCAT AAAGTACCAT CCTAAATATC TGAGATTTCT
  TGAATTGCCT AGTGACCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60500116	NES16522451	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A		G	A	A	G		A
ss325261443	CHEV_16_84713786	CHEVERUD	SCREENING_POP	f	SNP									A					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46002864					SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500116	NES16522451	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84510429 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	599 bp upstream
Mir155hg	Mir155 host gene (non-protein coding)	within coordinates
Rr404941	regulatory region 404941	206 bp downstream
Rr518521	regulatory region 518521	within coordinates
Rr518522	regulatory region 518522	208 bp proximal
Tssr139172	transcription start site region 139172	1681 bp downstream
Tssr139173	transcription start site region 139173	661 bp upstream
Tssr139174	transcription start site region 139174	1444 bp upstream
Tssr139175	transcription start site region 139175	1532 bp upstream