rs46003264 SNP Detail

Summary

• ID
  rs46003264
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14617856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTGAAGC AAGTCTAACT
  TACTAATTTC TGAATACTAA ATCTTTTTTC CATTGTACAG AGACTTCTGT TATACCTTGT
  GAATTCCACT GACAGAGGAG GAAATGTGCA TTTTTTTTTT TTTTTAGGTT GTCCTGGTGC
  CAAAAAGCAC GAGTTTCTGA CAAGTGTCCT GGATGCGCTC TCCACAGACA TGGTTCATGC
  Y
  GTCTCTGACC CCTCTTCCTC TTCTGGCAGG TATACTGTGT CTTGCTGCAG AGCAATATGC
  TGGCTTGAAG CCCAGAAGTT TGAAGGAATC TGGGAAGCTA AATTCTTCCT GGCCGGTGGC
  CATGTGAGAT CAGGCAGTTC ACTTGAATGT CTGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60541469	NES16554522	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
ss145199851	ENSMUSSNP833391	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46003264					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60541469	NES16554522	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14617856 () rs orientation: forward

Symbol	Name	Function Class
4930474M22Rik	RIKEN cDNA 4930474M22 gene	within coordinates
Rr522524	regulatory region 522524	1114 bp proximal
Smoc2	SPARC related modular calcium binding 2	within coordinates
Tssr5014	transcription start site region 5014	1350 bp downstream
Tssr142738	transcription start site region 142738	1433 bp upstream
Tssr142739	transcription start site region 142739	1641 bp upstream
Tssr142740	transcription start site region 142740	1666 bp upstream
Tssr146495	transcription start site region 146495	1337 bp downstream