rs46003414 SNP Detail

Summary

• ID
  rs46003414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:92274109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACCATAA TGAGAAGCTA
  ACAGCTCTCC TGTCTTCCTC CTTCGGGTTG ACTACCGCAG GACTGGACCC TTGTCCACGT
  AGCTCACCTC AGATGCCTCA GAGGTCCAGG TCTCATTTGC CAACCCCATC TCTTCCCCCC
  CCCCCAACCC TACCCACAAT CCACCACTGG TCTGTTTTCT CTCCCTATGC ATGAATGAAA
  Y
  GGGTCTGTAA TTTCTAAAAG CATCCCAGTT TTTTTCTCTA CCTTTTTGTG GATTTCTCCT
  CCTTAAATCA TGGCTTTATT GTCTCAGATG TCTGTGAAGT TTTAATTGCA CTGTGTGTGT
  TTGCAGATGT ACATGCATAC AAATGTGTGT GTATGGGGAG GGGCAGTTCA GGAGCTGCCA
  TCTTGGTTTT TGAGACGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60508520	NES16520115	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46003414					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60508520	NES16520115	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:92274109 () rs orientation: forward

Symbol	Name	Function Class
2410124H12Rik	RIKEN cDNA 2410124H12 gene	1521 bp upstream
Cpgi8471	CpG island 8471	1398 bp proximal
Rr319727	regulatory region 319727	1092 bp proximal
Rr325586	regulatory region 325586	1308 bp distal
Rr325587	regulatory region 325587	1491 bp proximal