rs46004221 SNP Detail

Summary

• ID
  rs46004221
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:92472034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGAGCTC AGCAACCCAG
  TATACCCGTG TTCGAATCCC ACTCGTTGCC TGTACAGTCA TACTCAAGGG CAACTTTGTT
  ACTGTCTCAC AGCCCTAGCT TTCTCTTCTG CAAAATACAA AGTGGTAACA GCTTTTGTGA
  GCTGCCCAAG GACACCTGAT GGGGGAGGAA TTGGGGAAGA GGAGGAACGC TCAACAGGTG
  W
  CAGAATTGCT GCTCAGACTG ATTTCTACTT GAACTTGGCG GTTCATGGCT GCATCACCAG
  CTGGCCACCC TTTAAGGCAT GACAGCGAGG GGCTGATCCA CTATATAAAC AAGCCAAGAC
  AGCAACATGT GGCGTCCTCC TCGACGCCAG TCTGCCCATC CAAAGGGCAG AACAAAATAC
  GAACTGCTTT ATTTAGTTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60507777	NES16526031	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46004221					SNP	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60507777	NES16526031	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:92472034 () rs orientation: forward

Symbol	Name	Function Class
D16Mit52	DNA segment, Chr 16, Massachusetts Institute of Technology 52	1228 bp proximal
Rr328209	regulatory region 328209	within coordinates
Runx1	runt related transcription factor 1	within coordinates