rs46004969 SNP Detail

Summary

• ID
  rs46004969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100306613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGAATT ATTGGTGGAA
  CGGTCTTGCA AGGAACAAAG TGTGCTCCTG TTGGGGGGGA TGTGCACAGG GGAGGGTTGA
  GGGCCATTCC CAGTGTCCTT CCTGCTTCCT GTCTGGTGAT CAAGATGAGC TCTCAGCGGT
  GCTGCTGCCA CCAGCATGGG CTGTAACCCT CTGAAACTCT AAGCCCAATT AAGTTGTTTT
  R
  TTTTATAAGT TGTCTTGGTC ACAGCATTGT TACAGGACTA GAAAAGTAAC TAAGACAGGA
  GGTTGGAGAC TGCCAGGGGC TGGAGAGATG GCTCAGCAGT TGAGAGCACT GACTGCTCTT
  CCAGGGTCCT GAGTTCAATT CCCAGCAACC ACATGGTGGC TCACAACCAT CTGTAATGGG
  ATCCGATGCC CTCTTCTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148475033	ENSMUSSNP2438393	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46004969					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100306613 () rs orientation: forward

Symbol	Name	Function Class
Rr509705	regulatory region 509705	1878 bp proximal
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	Intron
Tssr136419	transcription start site region 136419	1427 bp downstream