rs46005247 SNP Detail

Summary

• ID
  rs46005247
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22714921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTTTGA TCCTGCTGTG
  GGAAACTGGG GTGGGGGCAT CTTTTCACTT CCCGCTTCGA GCCTGGGATG ACTGGAACAT
  TGAATTCTGA AGGTTGAGGG CCAGGAGATG CTGGGTTTCC ATCCCTGCCG GACTAAAGTT
  AGCCTTTTGG CTTCCTGTTT CCTCTCTGAA AACTTAACCT CTGCCCCATG CGATGGACAA
  Y
  GATCTCTTGC CAATACTTTG AGAAGACTCA GATCTTTCAT CTGCAGCCCA TCGTCAGAAC
  TCAATCCTTC CAATTGCCCA GGGCCACACG TAGTCCGTGT GGATTTGTGT TCTCTCAAAC
  TGTGCCAGAC CATAGCTTCT CCTCTCCATC CCTCCCACCC TCCCTCTTAC CTTCCTTCCT
  CCTCTCCTTT GCTCCCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63681301	NES17064339	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46005247					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63681301	NES17064339	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22714921 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	1785 bp upstream
Rr513336	regulatory region 513336	1841 bp distal
Rr513337	regulatory region 513337	1375 bp distal
Tssr4819	transcription start site region 4819	830 bp downstream
Tssr4820	transcription start site region 4820	214 bp downstream
Tssr137563	transcription start site region 137563	1930 bp downstream
Tssr137564	transcription start site region 137564	1900 bp downstream
Tssr137565	transcription start site region 137565	1763 bp downstream
Tssr137566	transcription start site region 137566	1754 bp downstream
Tssr137567	transcription start site region 137567	1386 bp downstream
Tssr137568	transcription start site region 137568	1355 bp downstream
Tssr137569	transcription start site region 137569	1334 bp downstream
Tssr137570	transcription start site region 137570	1317 bp downstream
Tssr137571	transcription start site region 137571	979 bp downstream
Tssr137572	transcription start site region 137572	880 bp downstream
Tssr137573	transcription start site region 137573	870 bp downstream
Tssr137574	transcription start site region 137574	851 bp downstream
Tssr137575	transcription start site region 137575	841 bp downstream
Tssr137576	transcription start site region 137576	156 bp downstream
Tssr137577	transcription start site region 137577	251 bp upstream
Tssr137578	transcription start site region 137578	322 bp upstream
Tssr137579	transcription start site region 137579	1944 bp upstream
Tssr137580	transcription start site region 137580	1994 bp upstream
Tssr140504	transcription start site region 140504	1779 bp upstream
Tssr140505	transcription start site region 140505	1730 bp upstream
Tssr140506	transcription start site region 140506	1310 bp upstream
Tssr140507	transcription start site region 140507	947 bp upstream
Tssr140508	transcription start site region 140508	905 bp upstream
Tssr140509	transcription start site region 140509	887 bp upstream
Tssr140510	transcription start site region 140510	839 bp upstream
Tssr140511	transcription start site region 140511	825 bp upstream
Tssr140512	transcription start site region 140512	386 bp downstream
Tssr140513	transcription start site region 140513	397 bp downstream
Tssr140514	transcription start site region 140514	430 bp downstream