rs46008375 SNP Detail

Summary

• ID
  rs46008375
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:182780912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTAGGCGG TCCCTTTCCA
  TATTCCTAGC ACTCCTGGGA TAAATCCCCT CTGGTTTTAG GAAGGCAGTA AATGGCACCC
  AGCCCTCCCT GGCATTGTTC TCAGTCCCAC CCACATTATA GGAAGGCCCT ACCTCCTGGG
  CTTACAAGCC TCCTCCTCCC AGCTGCAGAG CAGGTAGGCA GGGTTGCAGT TCCATCCCTC
  Y
  GCACTCAGCT TTCGAGAGCC ACTTGAGGCA ACTTGTCACA TGGGCTTCAA GCTGCCAGCC
  GAGGAGGGAG CTGAGAAGAC TGTATAATGA GATCTTCCTT GGTAATTAAG TGCTGGGCTT
  TGTTTTAACC TATCTCTCCT GCCCTGCTTG ATCATATCAC CTAGCTGTCA GGCCACGCTG
  GAGAGTGTGA ATCAACCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60352277	NES15858507	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46008375					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60352277	NES15858507	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:182780912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1152	CpG island 1152	1388 bp proximal
Gm69962	predicted gene, 69962	within coordinates
Tlr5	toll-like receptor 5	1441 bp upstream
Tssr10570	transcription start site region 10570	1423 bp upstream