rs46009282 SNP Detail

Summary

• ID
  rs46009282
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:25207909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACATAAAA TTAAAATATA
  TGAATTTCCA GAAACAGATG ATGAAGAAGA GAATAAACTG GTTAAGAAGA TAAAGGTAGG
  TTCATTTCTC TGCACATTAA AATGTTTGAG CCTTCCAGTT GTGCTCTGAT ATGAAAGATC
  AAAGGTTTTA AAAAAAATAG TTGGCTTACT AACACAAGTA TGGATATTCC TGAATTTTAT
  M
  AACTTTATAG TTACTTTTGA TTGGCAACAC ATAAAACAGA GCATTGCACA GACTAGATGG
  ATGAATTCCA TCCTGAATTG TTTTCAGTTA ATTGCTTTCA TATTTGTATA ATTTTTTCTT
  TTTAAGAAAC AAGTATGAGT AGGAAGGGAA CTAATTTTTA ATTAATCGTC CTTTAAGAGG
  CTGATAAAAC TTGCTTCTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss136234464	ENSMUSSNP6053692	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46009282					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:25207909 () rs orientation: forward

Symbol	Name	Function Class
Septin7	septin 7	within coordinates
Tssr84136	transcription start site region 84136	1189 bp upstream
Tssr84137	transcription start site region 84137	1214 bp upstream
Tssr84138	transcription start site region 84138	1262 bp upstream