rs46010191 SNP Detail

Summary

• ID
  rs46010191
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:9813633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAGCTTG CGGTGGCGCG
  CAACCTTGGT GCTGAAACCA CGCTCTCCGC CCGCTCCCGG GCGTCTGGTG CTGCTGAAGA
  ATCAATTATT CAGATCTCTG CTACGGATTC CTCCTCCTCC AGTGCCTGGC GCTGGGTGCA
  GCAATCTCTG TTCCACGCAA GGCACGCCGA CACGCACACA CCCGCCCAGG ATGCTTCTCT
  Y
  AATGCCTCAC CACCCTGATA TGGGAACCCA CTCTGATGTC AGAGAGCCGG GAGCTTAAAA
  TCAGAAACAT ATATACTCTC TCCAAGCACA GACACGCGTG CGCGCGCGCA TACACACACA
  TACACACACA GACGCGCACC CACAGACACA CATACACACT TGCTGCTTCC TTCTCTAAGT
  TGTTCGAGAC AAAACGTAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63642041	NES17050197	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46010191					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63642041	NES17050197	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:9813633 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7945	CpG island 7945	within coordinates
Gm30668	predicted gene, 30668	1440 bp downstream
Grin2a	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	209 bp upstream
Rr511423	regulatory region 511423	1860 bp distal
Rr511424	regulatory region 511424	1198 bp distal
Rr511425	regulatory region 511425	356 bp distal
Rr511426	regulatory region 511426	248 bp distal
Tssr139893	transcription start site region 139893	1202 bp upstream
Tssr139894	transcription start site region 139894	757 bp upstream
Tssr139895	transcription start site region 139895	681 bp upstream
Tssr139896	transcription start site region 139896	465 bp upstream
Tssr139897	transcription start site region 139897	426 bp upstream
Tssr139898	transcription start site region 139898	397 bp upstream
Tssr139899	transcription start site region 139899	369 bp upstream
Tssr139900	transcription start site region 139900	326 bp upstream
Tssr139901	transcription start site region 139901	250 bp upstream
Tssr139902	transcription start site region 139902	220 bp upstream
Tssr139903	transcription start site region 139903	188 bp upstream
Tssr139904	transcription start site region 139904	100 bp upstream
Tssr139905	transcription start site region 139905	44 bp upstream
Tssr139906	transcription start site region 139906	37 bp downstream