rs46011720 SNP Detail

Summary

• ID
  rs46011720
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41116892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGG GGCTAACACA TTTACTATGA
  K
  TGTTACTAGC ACCATGGACA GACAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss136348441	ENSMUSSNP644724	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G		T
ss322923642	CHEV_9_41013679	CHEVERUD	SCREENING_POP	f	SNP				G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs46011720					SNP	G	G	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41116892 () rs orientation: forward

Symbol	Name	Function Class
1700063D05Rik	RIKEN cDNA 1700063D05 gene	559 bp upstream
Cpgi21610	CpG island 21610	1845 bp proximal
Gm68881	predicted gene, 68881	within coordinates
Rr194790	regulatory region 194790	692 bp distal
Rr194791	regulatory region 194791	within coordinates
Rr383259	regulatory region 383259	921 bp upstream
Tssr2832	transcription start site region 2832	590 bp upstream
Tssr84492	transcription start site region 84492	556 bp upstream