rs46011873 SNP Detail

Summary

• ID
  rs46011873
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:7282654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTT TTATTAGACA TTTAATAACA
  S
  TCTAGCATTT CGTGTTCTCT TAGCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60965512	NES16157279	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	G	G	G	G	C	G		G	G	G	G		C
ss322101536	CHEV_7_7232366	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46011873					SNP	G	G	C	G	G	G	G	G	C	G	C	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60965512	NES16157279	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:7282654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18306	CpG island 18306	1102 bp distal
Gm45844	predicted gene 45844	1366 bp upstream
Tssr64464	transcription start site region 64464	1655 bp downstream
Tssr70610	transcription start site region 70610	1610 bp upstream
Tssr70611	transcription start site region 70611	1569 bp upstream