rs46012173 SNP Detail

Summary

• ID
  rs46012173
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34932423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCT CTGTCCCTGT GCAGCTGTTA
  M
  GGTAGAAAAG CTTTCCTTTA GAGCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60993614	NES16129849	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	A	A	C	C	C	C		A	A	A	A		A
ss148805344	ENSMUSSNP3317476	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss322156695	CHEV_7_36018017	CHEVERUD	SCREENING_POP	f	SNP										A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46012173					SNP	C	A	C	A	A	C	C	C	C	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993614	NES16129849	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34932423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	1561 bp proximal
Gm38989	predicted gene, 38989	within coordinates
n-TTagt9	nuclear encoded tRNA threonine 9 (anticodon AGT)	1772 bp downstream
Rr645337	regulatory region 645337	within coordinates
Rr645338	regulatory region 645338	757 bp proximal
Rr645339	regulatory region 645339	1633 bp proximal
Rr645340	regulatory region 645340	1695 bp proximal