rs46012466 SNP Detail

Summary

• ID
  rs46012466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104695028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTAGGGTG GCCTCAAACT
  CATAGAGATC CTCCTGCTTT GGTCTCTCAA GAGCTGGGAT TAAAGGCATG CACCACCACT
  GCTGGGCTAG ACTATACGTT ATCTGAAGGC AGAGTTTCAT GGTTAGTACA TAGTTTTCAG
  TTCACATTCA ACCAATGTTT ACTGAATGAA TTCAGAGGCC TGGTGGACAA AACACCCTTC
  R
  CCTCAGTTAT ATGATTTATC AAATGTATGG TCCATGCTTC CAATCCTGAG TGAGTGTCTA
  CGTATGTTGT CTGCCTGGAT TTGAGACAGC TTCACTCCAC AGCCTATGTT GGCCTGGAAT
  TTGTGGTAAC TCTGCCCCCT CGGGAGTGCT GAGATGACAG GCATGAACCA CCCGGCCAGC
  TGCACCTGCA GTAGACTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ
ss60431861	NES15936361	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G		A	G
ss135571326	ENSMUSSNP4190797	ENSEMBL	ENSEMBL_Sanger	f	SNP	A					A			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ
rs46012466					SNP	A	A	A	A	A	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431861	NES15936361	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104695028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	832 bp proximal
Gm66976	predicted gene, 66976	597 bp downstream
Ppm1j	protein phosphatase 1J	1694 bp downstream
Rhoc	ras homolog family member C	1322 bp upstream
Rr77009	regulatory region 77009	572 bp proximal
Tssr31056	transcription start site region 31056	860 bp upstream
Tssr31057	transcription start site region 31057	1081 bp upstream
Tssr31058	transcription start site region 31058	1130 bp upstream
Tssr31059	transcription start site region 31059	1314 bp upstream