rs46014029 SNP Detail

Summary

• ID
  rs46014029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:33878640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTAGGAC ATCCATAGGT
  TGGAGTTCAG GCAGCCTTAG GGTAGGGCAG GCTCCCCTGC TTTGTATCCC CAGCTCTTCT
  CGCTATTCCG AGAGGCTGGG TAAGTTTCTT CCAAAACCTG TGTGTTCTTG GGGAAGTGTG
  GACATCGTTC CTGAGCAGGA TGCAGGCAGC TGGTTAGTTT GATAAATACA GCAGCGTGTC
  Y
  GTCTTTTCTA GGGTGCAATC CCTGGGTCTT TCATCATGTA AACTCTGCTC CATCCTTCAC
  TGGAAGACCT GTTCACACGT ATTTGTATTT GTCTTCCTGG AACTGTCAGG CTTTGTACCT
  GAGGATTTAG TGCTCTTTGC ACAGGGTTCA TTCAGCTCAG GGGGCCAGTT CACTGTGAAG
  ACGCCCTAAC ACCTAGACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61135456	NES16645773	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46014029					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61135456	NES16645773	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33878640 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15741	CpG island 15741	144 bp proximal
Fgfr3	fibroblast growth factor receptor 3	428 bp upstream
G630022F23Rik	RIKEN cDNA G630022F23 gene	within coordinates
Rr366768	regulatory region 366768	within coordinates
Rr407322	regulatory region 407322	within coordinates
Rr609611	regulatory region 609611	within coordinates
Rr609612	regulatory region 609612	520 bp proximal
Rr609613	regulatory region 609613	1021 bp proximal
Tssr45829	transcription start site region 45829	464 bp downstream
Tssr45830	transcription start site region 45830	473 bp upstream