rs46015454 SNP Detail

Summary

• ID
  rs46015454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85328053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTCCAT TGCATTAACG
  GTGCTTTCTC TCCTCTCCCT CCTCATTTGG GGTGTGGCTT GCTTTTTTCC TATTGGTTGG
  CTTCATGTAG GGGCCTCTGT GAGTGTTGAA TACTCTAAGC TCCTCAGGGT GGGTGGAAGG
  TCACCTTTCT TCCTCATCTC CTCAGAATAA CTTCATCAAC CTGAGCTTTC TCCGCCTCTT
  Y
  CGTGCTGCCA GACTCATCAA ACTCCTCCGC CAGGGTTACA CCATCCGCAT TCTCCTCTGG
  ACTTTCGTGC AGTCCTTCAA GGTGAGACAC AGCCGCCGCT ACTGCTGCCG GCCCGTCCCG
  GGCCAGAACA GACCTCCTAG CTCCGGGTAA AATGGGGAAA CCACACTGAA AGTGCTTCTG
  TAATCGTCTG ATGTCTACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60644344	NES16270697	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46015454					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60644344	NES16270697	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85328053 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1a	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi20697	CpG island 20697			521 bp distal
Cpgi20698	CpG island 20698			125 bp proximal
Gm64375	predicted gene, 64375			within coordinates
Rr666538	regulatory region 666538			920 bp distal
Rr666539	regulatory region 666539			571 bp proximal
Tssr78406	transcription start site region 78406			47 bp downstream
Tssr78407	transcription start site region 78407			within coordinates
Tssr78408	transcription start site region 78408			39 bp upstream