rs46016641 SNP Detail

Summary

• ID
  rs46016641
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55658230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAAAAAC TAGTAAAATT
  AATTAATTAG ATAAAATCAG GGGAAGCAAA ACAAGACTCT GGGGTGCCAG GCATGGTATA
  CGTGTGATGC TAACACTCAG GCAGGCTAGG CAGAAGGACT GGCAGCTCAA GGCAAGATGC
  CCCCTCATTC CGTGGCTGTT TGGGGTCTGT ATGTCCCCTC TCACCTTTGT TTCACTCCAA
  M
  GAGCCCCTAA TAATGGGGAC GGGGAAGTGA CACTGTAAAA GGGAAATGAC CTAGTCACAG
  GCATGGTGAG TCAGCACATG GAGACCTGGG TTAGCCACTC CTTCCTATAC AGGCTGCTTC
  CTGAGAGGTG TGGGGCAAGA CCAAGGTGGG GGGTCCTGGG AGGAGGAGCC ACTGGCTCCC
  TGAAAAGGGG TGGAGACATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss149037251	ENSMUSSNP4589134	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46016641					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55658230 () rs orientation: forward

Symbol	Name	Function Class
Pdlim7	PDZ and LIM domain 7	within coordinates
Rr281453	regulatory region 281453	within coordinates
Tssr122709	transcription start site region 122709	1922 bp downstream
Tssr122710	transcription start site region 122710	1940 bp downstream