rs46017788 SNP Detail

Summary

• ID
  rs46017788
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127203666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACCCACA TTTTATATGG
  TGCTGGGGTT CAGAACTCAG CCATTCATCC TTGTGCAGCC AGGGCCTTCC ACTGAGCCTC
  CTCAGTCCCT TCTTATCTTT GTCCCTTTGA GACAAGGTTT TACCTTGTAG CCCAGGCAAG
  TCCCCAACTC ACAGCAACCT CCATGCCTCA ATCTTCGTAT TCCTGGGGTT ACAAATACGA
  R
  CCACCACAGA TGGCTTTAAA TTGGAACGCT GTTAGGTAAA CCATGTTTTA TTCTAATTTC
  ATTATGGTAT ATTGTAATGA GTACAAAATT TAAGGTAAGA AAATTCAAAG TCACTAAGGG
  TTTGTTGTTG CTGCTGTTGC TGTTTCATTT TGTTTGTTTG TTTGTTTGCA AGACAGGGGT
  CTCTCTGGGT AGCCTTGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135862695	ENSMUSSNP5533504	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320953872	CHEV_3_127112935	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46017788					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127203666 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	1102 bp distal
Gm52631	predicted gene, 52631	within coordinates
Rr584773	regulatory region 584773	1061 bp distal
Rr584774	regulatory region 584774	468 bp distal
Tssr35571	transcription start site region 35571	1130 bp upstream
Tssr35572	transcription start site region 35572	1036 bp upstream
Tssr35573	transcription start site region 35573	1009 bp upstream
Tssr35574	transcription start site region 35574	974 bp upstream
Tssr35575	transcription start site region 35575	953 bp upstream