rs46018416 SNP Detail

Summary

• ID
  rs46018416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:35112123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCAACAC CCACCAAAGT
  ATGTGAAAAT GGATTCTAGG GTTATCATCT CTGAGAACAG CCTTGGAGGT GAGACCTTTC
  TGGGATGGTT GTCCTATCTG GACAGGAGGC TACAGTAGTC TCTAAGGGTC TCCTTTCCAC
  TCCTGCTGTT TCTACAGATG GCCCTGCAGA TGGAGCCCTA GATGCACTGT CTGCCAGGAT
  Y
  TTATCATTGC ATCCTGAACC AGTCCTGGGA GTCAATCTCT TAAGAGCATT CCCTCTTTTA
  GACTAACGCT TCCTACCCTC TGCCCTCTTT CAACATTAAG CAGCTACAGG GATCACCACC
  CTCTCCATTC TCAACCTATG GTATCAGTCT CTGAGTGGGA GGAATGAAGG AGAGCCAAAG
  GGCCATAGGC AGACTGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60718123	NES16346975	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46018416					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60718123	NES16346975	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:35112123 () rs orientation: forward

Symbol	Name	Function Class
D1Mit243	DNA segment, Chr 1, Massachusetts Institute of Technology 243	1659 bp proximal
Gm53547	predicted gene, 53547	within coordinates