rs46018672 SNP Detail

Summary

• ID
  rs46018672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:82070063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTAAAGAG CTCTCTTTTC ATGGCTATCT CCAGCCCCAC
  CTTCAGCAAC TCCTGCCCTC TCCGTCCCCC CAACACCACC CCCCCAAGTC AGGCCTGTTA
  Y
  CCCTAGGCTA CCTTCATGTT CTACCTACCC CAAAGAGAAG TCAAGAAAGA GTTAGAAAAT
  CAGGGCTTCA AAGTAAGAGT GGGTGATGAG AGGCTCCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145259380	ENSMUSSNP902848	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss322727470	CHEV_8_83867333	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46018672					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:82070063 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20635	CpG island 20635	401 bp distal
Gm51582	predicted gene, 51582	771 bp upstream
Inpp4b	inositol polyphosphate-4-phosphatase, type II	within coordinates
Rr666047	regulatory region 666047	1750 bp distal
Rr666048	regulatory region 666048	862 bp distal
Rr666049	regulatory region 666049	within coordinates
Tssr78167	transcription start site region 78167	924 bp downstream
Tssr78168	transcription start site region 78168	889 bp downstream
Tssr78169	transcription start site region 78169	859 bp downstream
Tssr78170	transcription start site region 78170	817 bp downstream
Tssr78171	transcription start site region 78171	716 bp downstream